Open Source Packages on IBM Linux on Power-LE February 2016

Open Source Packages
on
IBM Linux on Power-LE
February 2016
Eberhard Saemann
[email protected]
Open Source Ecosystem
Dev. Env
/Tools
Available:
Angular.js,Backbone,
Bootstrap, buildbot,
busyBox, Continuum,
CruiseControl, Docker ,
Eigen lib, Erlang, Ganglia,
GCC, gccgo, GDB,
GoLang, Gump, Jenkins,
Jruby, Lynx,
LLVM, logstash, logstashforwarder, kibana,
Maven, Nagios, NGINX,
node.js, OCaml,
OpenJDK, Phantom.js,
PHP, phpMy Admin, Perl,
PyCi, Python, PythonDjango, Python-Pip
ecosystem, PyPy, R,
RabitMQ, rsyslog, Ruby,
Ruby on Rails (rbenv),
Ruby Gems, scala,
snappy, Socket.io
(npmjs), SpiderMonkey,
Strider, Supervisord,
SystemTap, Vagrant, V8,
Xerces
Databases
Big Data
& Analytics
Available:
Accumulo (column),
Cassandra
CouchDB (document)
Couchbase (noSQL)
Derby, MariaDB (v10.x
optimized), EnterpriseDB
Memcached (KVS)
MongoDB 3.2 (document)
MySQL,
PostgreSQL, RabbitMQ
Redis (KVS), Riak, SQLite
TokyoCabinet
Virtuoso (graph)
Available:
Hadoop Base, Hive,
HBase, Accumolo,
Ambari, Avro,
ElasticSearch
Falcon, FluentD
Flume, Hue, Kafka,
Knox, Lucene-Solr,
Mahout, Oozie,
Parquet, Phoenix
Pig, Ranger, Slider,
Spark, Sqoop,
Storm, Tez,
Zookeeper
Port In Progress:
GPUDB, Neo4j (graph),
Optimizing:
Hadoop
Optimizing:
PostgresSQL (1.86x)
CouchDB
Evaluating:
InfiniSQL
Optimized:
R
Port In Progress:
Travis-CI
© 2016 International Business Machines Corporation
Cloud
Managemnt
Stack
Available:
Apache Web Server
Apache tomcat
Ceph, Chef Client,
Glassfish, Jetty,
Juju & Juju gui
Landscape client
MAAS, OpenStack,
Puppet
Apache Qpid
Thrift
Ceilometer client,
Sensu Server &
Client
Port In Progress:
Chef Server v12
Evaluating:
Clusterpoint
Other
HA,
Security
etc.
Available:
Alfresco, BTRFS,
Bootstrap
CentOS
Chroma-key
Cluster Glue,
corosync, CRMshell,
DRBD
Evolution data svr,
ClusterGlue,
HAProxy, Heartbeat
keepalived
Ldirectord,
Linux-HA. mesos
OpenSSL
Pacemaker, REAR,
resource agents,
Samba, Tophat
WordPress
Port In Progress:
Available: Open source application is ported and
available on distro (Ubuntu or RHEL or SLES)
(black), in community (purple), Lab7 (green) or
IBM IOP (blue). Does not mean it is optimized.
Does not mean that a commercial ISV version is
available.
Evaluating: Needs to be vetted in new business
development prioritization process. Some of these
are available codes that need optimization to be
competitive with x86.
Evaluating:
Cluster-Network
Open Identity Stack
(forgerock.com)
Technical
Computing
Available:
ALLPATH-LG, bfast,
BioConductor, BLAST,
BOOST, Bowtie2, BWA,
EMBOSS, FASTA, FastQC,
HMMER, HTSeq, ISAAC,
PICARD, PLINK, RNAStar,
RSEM, SAMTools, SAMTools
1.0, SeqAn, SHRiMP,
SOAPAligner, SOAPbuilder,
SOAPDenovo, TMAP, TopHat,
ABySS, Balsa, Caffe, CodeSaturne, GATK, GMP, Heat3d,
IOR, Lattice-Boltzmann,
LAPACK, OpenFOAM,
waterman ….
Optimized & GPU enabled:
AMBER14, CHARMM, Galaxy,
GAMESS, GROMACS, HPCchallenge, KKRnano,
LatticQCD, MAFIA, NAMD.
NEST, PEASOUP, PLUTO,
Quantum Espresso, QUDA,
SOAP3-DP, WRF
Evaluating:
ALYA, CEGMA, DIALIGN-TX,
MUSCLE, openQCD, RSEM,
SIFT, STREAM, T-Coffee,
miRdeep2, ucsctools,
ViennaRNA,
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Available Technical Computing Packages
ABySS, ALLPATHS-LG, ALYA, Amber14, ATLAS
Lattice-Boltzmann, LatticeQCD (LQCD), LAPACK
BAMtools, Barracuda, bedtools, bfast,
(liblapack3), LES, LSQR, LibGD<partially>, libpng, Ludwig
BioConductor, BLAS (libblas3), BLAST (NCBI), Boost,
MAFIA, Matplotlib, Mdtest, MG2, Mothur, MPAS-A,
Bowtie, Bowtie2, BWA, bzip2
MurmurHash,
Caffe, c-ares, CHARMM, ClustalW, Code-Saturne,
NAMD, NEST, nlopt, nose (Python), NumPy, NWChem,
CoMD (LJForce), Cosmo SVN, CP2k, CPMD,
Oases, OpenARC, OpenFOAM, OpenQCD,
Cufflinks
EBSEQ (R), Eigen (eigenlib), EMBOSS, Eureka,
Eureka-client,
FASTA, FastQC, fftw (vectorized),
Galaxy, GAMESS, GATK, GMP, gnuplot, Graphviz,
GROMACS,
Heat3d, HMMER, HOMM-COMM, HPC Challenge
(incl. Linpack HPL), HPCG, HPL, HTSeq, Htslib,
IGV, IOR, iRODS (beta), iSSAC (Illumina),
Jurrassic, KKRnano
© 2016 International Business Machines Corporation
PEASOUP, PICARD, PIConGPU, PLINK, PLUTO.
POPPPerf, Pysam. PyReshaper
QuantumEspresso, QUDA
R, regCM. RNAStar, RSEM
SAMtools, Scalpel, SeqAn, SHOC, SHRiMP, SOAP3-DP,
SOAPAligner/SOAP2, SOAPbuilder, SOAPdenovo2,
spice, SQLite, STREAM
tabix, TMAP, TopHat, Trinity
VASP, variant_tools, Velvet/Oases, native vector support
libs, Waterman, WRF
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Hadoop Packages
package name
Hadoop base
RHEL
7.1 LE
2.7.1
RHEL
comment
2.7.1
HDFS, MapReduce,
YARN
package name
RHEL
7.1 LE
Ranger
0.4.0
Slider
0.80.0
0.80.0
Solr
5.1.0
5.1.0
Spark
1.4.1
1.4.1
1.4.6
Accumulo
1.5.1
Ambari
2.0.0
Avro
1.7.7
Falcon
0.5.0
Sqoop
Flume
1.4.6
1.5.2
1.5.2
Storm
HBase
0.9.3
1.1.1
1.1.1
Hive / HCatalog
Tez
1.4.6
1.2.1
1.2.1
ZooKeeper
3.5.0
Hue
Kafka
2.1
3.6
0.8.2.1
0.8.2
Knox
0.6.0
0.6.0
Lucene-Solr
5.1.0
4.7.0
Mahout
0.9.0
Oozie
4.2
Parquet
RHEL
IBM Open Platform
with
Apache Hadoop
comment
3.4.6
4.1
Includes
Hadoop 2.7.1 &
Spark 1.4.1
IBM Open Platform w/ Apache Hadoop
4.2.0
4.0
Parquet-mr
1.6.0
1.6.0
Parquet-Format
2.3.0
2.2
Phoenix
0.4.0
Pig
0.15.0
0.15.0
http://www-03.ibm.com/software/products/en/ibm-openplatform-with-apache-hadoop
Hadoop packages (IBM developerWorks)
https://www.ibm.com/developerworks/community/wikis/home?la
ng=en#!/wiki/W51a7ffcf4dfd_4b40_9d82_446ebc23c550/page/I
BM%20Linux%20on%20Power%20Software%20%20Mongodb%2C%20Nodejs%2C%20V8%2C%20Hadoop%2
C%20Cassandra%2C%20etc
Package availability: blue = IBM Open Platform, purple = open source, see IBM DeveloperWorks
© 2016 International Business Machines Corporation
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More Information
Lab7 package info
http://biobuilds.org/tools-in-biobuilds/biobuilds-2/
IBM Open Platform with Apache Hadoop
http://www-03.ibm.com/software/products/en/ibm-openplatform-with-apache-hadoop
Hadoop packages (IBM devWorks)
https://www.ibm.com/developerworks/community/wikis/home?lang=en#!/wiki/W51a7ffcf4dfd_4b40_9d82_446ebc23c550/page
/IBM%20Linux%20on%20Power%20Software%20%20Mongodb%2C%20Nodejs%2C%20V8%2C%20Hadoop%2C%20Cassandra%2C%20etc
Open Source Packages on IBM DeveloperWorks
https://www.ibm.com/developerworks/community/wikis/home?lang=en#!/wiki/W51a7ffcf4dfd_4b40_9d82_446ebc23c550/page/IBM%20
Linux%20on%20Power%20-%20Open%20Source%20Software
UBUNTU package search (Trusty, 14.04)
https://launchpad.net/ubuntu/trusty/+search?text=MariaDB
© 2016 International Business Machines Corporation
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