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Science Scene January 2012 to May 2012
Science Scene A publication of the College of Science, Utah State University To share the research and professional development activities of our faculty and students with the College, Utah State Administrators, and the Board of Trustees. January 2012 to May 2012 —The Dean’s Corner— Dear Friends: WOW! Temperatures are in the mid-nineties, several very large fires have broken out across the state, and the campus is alive with students visiting to give us a once over with regard to enrolling here or just to take advantage of the many summer programs the University offers. As I reviewed this issue of Science Scene I became ever more impressed by the accolades our students and faculty have garnered this year. These pages contain reports of graduate students writing research papers that have appeared with wonderful reviews in prestigious journals, of scientists whose work with fossils has caused colleagues to name new species after them, to students being named Goldwater Scholars, colleagues writing books and a veritable plethora of other awards and honors. As a dean I could not be happier with the progress our programs have made and with the quality of our faculty and staff. The University is attempting to develop a more active summer session. This would allow students greater access to a wider variety of classes and would help us spread the students into three sessions rather than two. The Provost and the President have worked hard to begin development of a more extensive and intensive summer school experience. All in all, things are going well and people have really pulled together during the period of reduced funding. I think we are turning the corner and the future looks great. It is my pleasure and honor to be associated with the University family. Sincerely, — College of Science Contract & Grant Activity — $ Amounts (# of proposals) January 2012 Proposals Submitted $2,004,581 (23) Awards Received $925,627 (18) COLLEGE OF SCIENCE February 2012 March 2012 April 2012 $6,004,427 (18) $11,340,084 (16) $2,186,068 (12) $164,218 (2) $201,369 (5) UTAH STATE UNIVERSITY $609,552 (5) May 2012 Cumulative Totals FY11-12 $3,133,838 (20) $39,537,985 (142) $1,327,667 (14) $8,807,010 (100) 0305 OLD MAIN HILL, LOGAN UTAH 84322-0305 — Inventing the Wheel: USU Grad Student’s Paper is ‘VIP’ in Top Journal—Chemist Timur Galeev’s research paves the way for nano-object development A paper recently published in a leading international chemistry journal by USU graduate student Timur Galeev has been selected as a “Very Important Paper.” Galeev is first author on the article, published in the Feb. 1, 2012 online issue of Angewandte Chemie International Edition, a journal of the German Chemical Society. “The ‘VIP’ designation means that Timur’s paper is among the top five percent of articles selected by the journal’s referees,” says Alexander Boldyrev, professor in USU’s Department of Chemistry and Biochemistry and faculty mentor to Galeev. “This is an impressive honor from a prestigious journal and an impressive accomplishment for a doctoral student.” Boldyrev is quick to point out that Galeev has published 10 papers in peerreviewed journals in the past year and a half. The doctoral student’s paper in Angewandte Chemie details the research team’s successful production of a molecular nanowheel that achieves the highest coordination number for a central atom to date. USU doctoral student Timur Galeev, right, pictured with faculty mentor Alex Boldyrev, is first author on a paper selected for the top tier of a prestigious international chemistry journal. “It’s a new record,” Boldyrev says. In chemistry, the coordination number of an atom refers to total number of “neighbors” of a central atom in a molecule or ion. In this case, Galeev and Boldyrev, working in collaboration with Brown University scientists Constantin Romanescu, Wei-Li Li and Lai-Sheng Wang, modeled clusters of 10 boron atoms gathered in a ringlike structure, unlike any seen before. The highly symmetrical model resembles an old American West wagon wheel with ten spokes. “It’s a very stable structure,” Galeev says. “It reveals a new understanding of how chemical bonding theory works.” The team conducted the National Science Foundation-funded research using a laser-vaporization supersonic molecular beam technique combined with photoelectron spectroscopy and quantum-chemical calculations. Boldyrev’s alum Boris Averkiev, recipient of USU’s 2009 Robins Award as Graduate Researcher of the Year and now a postdoctoral fellow at the University of Minnesota, contributed to the project’s calculations. Boldyrev, recipient of USU’s 2009 D. Wynne Thorne Career Research Award, says the research lays the groundwork for development of a variety of nano-objects. “The development of these kinds of chemical bonding models will have a significant impact on rational design of nanocatalysts, nanomaterials with tailored properties, nano-scale electronic devices and more,” he says. “That’s our goal.” – by Mary-Ann Muffoletto For the full story, visit http://www.usu.edu/ust/index.cfm?article=50744 2 — Prehistoric Aggie: USU Geologists Celebrate Namesake Trilobite — In recognition of nearly 20 years of field work in Utah’s ultra-steep Wellsville Mountains, along with exhaustive classification and sedimentation modeling of Cambrian formations, USU geology professor Dave Liddell has a prehistoric namesake. Zacanthoides liddelli is the prodigious name given to the spiky little critter. The newly identified species of trilobite is described and named by paleontologists Richard Robison of the University of Kansas and The Ohio State University’s Loren Babcock in a paper published in the Nov. 30, 2011, issue of the online journal Paleontological Contributions. Tiny Zacanthoides liddelli, a trilobite that existed some 520 million years ago, is named for USU geologist Dave Liddell. “This trilobite was named after me in acknowledgment of the work my students and I have done on the local Cambrian rocks,” says Liddell, head of USU’s Department of Geology. Barely an inch long, tiny Z. liddelli lived about 520 million years ago and experienced a landscape much different from today’s Utah. “During the Cambrian period, Utah was situated within five degrees of the equator,” Liddell says. “The current Wellsville Mountains didn’t yet exist. Instead, this area was covered by a shallow ocean with a warm, tropical climate.” Z. liddelli was likely a sediment-processor, he says, subsisting mostly on algae. “The diminutive invertebrate might have been pursued by larger, carnivorous arthropods such as the shrimp-like Anomalocaris or the bizarre, multi-tentacled Hallucigenia.” “The trilobite’s spiny exterior was probably its best defense against predators,” Liddell says. “Nobody would want to take a bite out of that.” Z. liddelli is among a profusion of trilobites, ranging in size from about a millimeter to the length of a skateboard, that flourished during the Cambrian period. The hard-shelled, segmented creatures roamed oceans of the lower Paleozoic era for more than 270 million years. “Fossils of between 50 to 60 trilobite species have been found in the Spence Shale of the Wellsvilles,” Liddell says. The three-lobed arthropods, among the world’s first creatures with compound eyes, eventually died out at the end of the Permian period. Writer: Mary-Ann Muffoletto For the full story, visit http://www.usu.edu/ust/index.cfm?article=50657 3 Dave Liddell, left, professor and head of USU’s Department of Geology, and colleague Bob Gaines of the University of California, Pomona, rest on an outcropping of the Spence Shale Formation in Utah’s Wellsville Mountains. — ’Ag’ Normal: USU Statistician Co-Authors New Book for Mixed Models — For scientists involved in statistical analysis, it’s all about distribution. And the normal distribution, with its symmetrical bell curve, is not a global truth, says Utah State University statistician Susan Durham. “Data from research – especially agricultural and natural resources research – is not always normally distributed,” says Durham, a statistical consultant in the USU Ecology Center. “Software to help researchers analyze these kinds of data, particularly in complex designs, has only been around for a few years.” Durham is among a multi-state group of authors who recently published a guide to help researchers navigate modern statistical methods pertaining to the design and analysis of mixed models for non-normally distributed data. “Analysis of Generalized Linear Mixed Models in the Agricultural and Natural Resources Sciences,” by Edward Gbur, Walter Stroup, Kevin McCarter, Durham, Linda Young, Mary Christman, Mark West and Matthew Kramer, provides researchers using SAS® statistical software with practical examples for field trial applications. Susan Durham, a statistical consultant with the USU Ecology Center, has co-authored a new book that offers guidance to scientists involved in agricultural, natural resources, ecological and biological research. “The theory of these generalized linear mixed models is still ahead of our understanding of how to actually do the modeling, so preparing this book was a fabulous learning experience for all of us,” Durham says. “What’s unique about the book is it takes a very practical approach to help researchers apply these statistical methodologies to their data.” Researchers involved in such areas as natural resources, ecological, biological and agricultural science research, especially those using field trials, will benefit from the book, she says. Published by the American Society of Agronomy, the Soil Science Society of America and the Crop Science Society of America, the book is the culmination of a five-year project funded by the Multi-state Project NCCC-170 “Research Advances in Agricultural Statistics” under the auspices of the North Central Region Agricultural Experiment Station Directors. Durham’s participation in the project was facilitated by travel funds from the Utah Agricultural Experiment Station. Writer: Mary-Ann Muffoletto For the full story, visit http://www.usu.edu/ust/index.cfm?article=50855 4 Durham and team’s book demonstrates, through examples, the design and analysis of mixed models for non-normally distributed data and challenges traditional statistical methodology. — Aggie Gold Standard: Four USU Students are 2012 Goldwater Honorees — Two USU students are 2012 Goldwater Scholars and two Aggies received honorable mention in a prestigious national competition that recognizes outstanding undergraduate achievements in science and mathematics. Mitch Dabling and Sarah Mousley are recipients of the award, which is administered by the Barry M. Goldwater Scholarship and Excellence in Education Foundation. Jordan Rozum and Rachel Ward received honorable mentions. Mitch Dabling, civil engineering At USU, Dabling has excelled in a variety of hydraulic engineering research projects resulting in invitations to present at prestigious academic conferences and publish in professional journals. He served as captain of USU’s Concrete (from left to right) Mitch Dabling, Sarah Mousley, Rachel Ward , and Jordan Rozum, earn Canoe Team, leading Aggies to first place at the 2011 American Society of Civil Engineers Rocky Mountain Region Student Conference. The team quali- national honor fied to participate in the 2012 National Concrete Canoe Competition; the first USU group to receive this honor. Dabling plans to pursue doctoral studies in civil engineering and specialize in dam rehabilitation. Sarah Mousley, mathematics To Sarah Mousley, the world consists of endlessly multiplying webs of connections: computer users connected by the Internet, airports connected by flight paths, countries connected by trade, atoms connected by bonds. The self-described born mathematician, a USU Presidential Scholar and University Undergraduate Research Fellow, has proved several theorems on the structure of networks. Mousley, who completed a competitive NSF Research Experience for Undergraduates at the University of North Carolina, Asheville in 2011, also assists fellow students as an Undergraduate Teaching Fellow, a certified tutor in USU’s Drop-In Math and Stats Tutoring Lab and as a tutor for USU Multicultural Student Services. Following graduation from USU, she plans to pursue doctoral studies in graph theory, teach and conduct research in pure mathematics at the university level. Jordan Rozum, physics and mathematics After graduating from InTech Collegiate High School in 2010, Rozum entered USU as a Presidential Scholar and University Undergraduate Research Fellow. His undergraduate research activities in atmospheric physics and astrophysics have included analyzing data collected by a USU Space Dynamics Laboratory-built satellite and study of galaxy geometry. Rozum plans to pursue graduate study in physics and math and a career as a professor at a research university. Rachel Ward, physics and mathematics After completing her initial studies at Utah’s Salt Lake Community College, where she was named to the President’s List, Ward entered USU on a Dean’s Transfer Scholarship. The undergrad has pursued research ranging from rocket science with USU’s Aerospike Engineering Lab to investigation of gravity waves in the Mesosphere with USU’s Center for Atmospheric and Space Sciences. Following graduation from USU, Ward plans to pursue graduate study in biophysics or biomedical engineering. Writer: Mary-Ann Muffoletto 5 — College Faculty Research Awards 2012 — Name Award Department Christopher Corcoran Faculty Researcher of the Year Mathematics and Statistics Sean Johnson Chemistry and Biochemistry Undergraduate Research Faculty Mentor of the Year — College Student Research Awards 2012 — Name of Student Award Department Scott Roy Undergraduate Researcher of the Year Mathematics and Statistics — College of Science Minigrant Recipients 2012 — The College of Science awards minigrants of $750 to qualified sophomores, juniors, and seniors. These funds are matched by a departmental contribution of $250. Awards are intended to encourage students to become involved in their first mentored research experience. Minigrant recipients for 2012 are: Name of Student Department Mentor Elisabeth Horne Geology James Evans Jory Johnson Biology Diane Alston Jessica Shaw Biology Edmund Brodie Brennan Young Geology James Evans — VPR Seed Grants Selected for Funding July 1, 2012 — Seed Program To Advance Research Collaboration (SPARC): Dr. S.K. Morgan Ernest (PI, Assoc. Prof., Biol, SCI), Peter Adler (Assoc. Prof., WILD, NR), David Koons (Asst. Prof., WILD, NR), Ethan White (Asst. Prof., Biol, SCI), Paul Wolf (Prof., Biol. SCI), and Mike Pfrender (Assoc. Prof., Biol., Notre Dame Univ.). “The Ecological and Evolutionary Consequences of Generalist and Specialist Coexistence Strategies”. $34,936. Drs. Jixun Zhan (PI, Asst. Prof., BE. ENG), Jon Takemoto (Prof., Biol., SCI), and Dong Chen (Res. Assoc. Prof., BE. ENG). “Identification of the Biosynthetic Gene Clusters of Two Antifungal Natural Products”. $34,997. For more information, visit: http://research.usu.edu/facultyfunding/ Fall 2012 Deadline: Submit applications to the College of Science Dean’s Office no later than 5 October 2012. Questions? Contact Lisa M. Berreau at 797-3509 or [email protected]. 6 — Intermountain Graduate Research Symposium April 5-6, 2012 — The Intermountain Graduate Research Symposium is a student-organized conference focusing on graduate research and projects throughout the Intermountain West. The symposium encourages graduate students within the region to share their research findings in presentation or poster format, network with fellow graduate students from USU and other universities, and gain professionalism through the conference experience. Presentations were given by the following College of Science graduate students: Name of Student Title Department Mentor Eric Addison Busted: The Final Showdown between Binaries and Black Holes Physics Shane Larson Jeremy Bakelar Characterization of the Zinc Knuckle Proteins Air1 and Air2 Chemistry and Biochemistry Sean Johnson Nicole Boehme Niche Partitioning of Velvet ant (Hymenoptera: Mutillidae) Communities in Sand Dune Habitats at Ash Meadows National Wildlife Biology Refuge, Nye County, Nevada James Pitts Zachary Brym Developing an Agroecological Approach to Biomass Scaling and Branching Architecture using Orchard Trees Biology Morgan Ernest Sarah Clark Effect of Dispersed Oil and Gas Development on a Bee Community in the Piceance Basin, Colorado Biology James Pitts Fine-Scale Topography Shapes Spider Community Structure along Stephanie M. Cobbold an Elevation Gradient: Links between Guild Identity, Temperature and Habitat Structure Biology James MacMahon Andrew M Durso Dietary Ecology of a Sand Prairie Snake Community Biology Alan Savitzky Oleksandr Gromenko Testing the Equality of Mean Functions of Ionospheric Critical Frequency Curves Mathematics and Statistics Piotr Kokoszka Yukie Kawasaki Syringomycin E: A Potential Organic-Compatible Agrifungicide Biology Jon Takemoto Ellen Klinger Chalkboard Co-Infections of Leafcutting Bees (Megachile rotundata): Understanding the Arms Race between Obligate, Facultative, Biology and Non-Pathogenic Fungal Species Rosalind James Jonathan Koch Investigating the Species Boundaries of North American Thoracobombus (Hymenoptera: Apidae, Bombus) Biology James Pitts Abibat Lasisi Validation Study: A Case Study of Calculus 1 (Math 1210) Mathematics and Statistics Brynja Kohler Michael Rigley Numerical Techniques in Modeling Fluid Flow through Porous Media Mathematics and Statistics Joe Koebbe Juanita Rodriguez Historical Biogeography of the Cosmopolitan Spider Wasp Genus Ceropales (Hymenoptera: Pompilidae) Biology James Pitts Emily Sadler The Black-Headed Conundrum: Species Boundaries in Chyphotes (Hymenoptera: Chyphotidae) Biology James Pitts Sanjib Shrestha Bioactive Properties and Mechanism of Action of Novel Antifungal Biology Aminoglycoside Analogs Jon Takemoto Leda Sox Observations with the most Sensitive Rayleigh-Scatter Lidar Vincent Wickwar 7 Physics — Intermountain Graduate Research Symposium (cont.) — — Presentations (cont.) Name of Student Title Department Mentor Lori R. Spears Prey Availability Mediates Spider Response to Shrub Architecture: A Structural Equation Modeling Approach Biology James MacMahon Erica Stephens The Contribution of Predatory Insect Life Stage Diversity to Pea Aphid Suppression in Alfalfa Biology Ricardo Ramirez Lacy Taylor Structural and Functional Characterization of RNA Surveillance Proteins Chemistry and Biochemistry Sean Johnson Rushun Tian Bifurcation Results on some Elliptic Systems Mathematics and Statistics Zhi-Qiang Wang Cecilia Waichert Assessing Species Boundaries using a new Molecule Marker: The Case of Agenilla Accepta Species-Group (Hymenoptera: Pompilidae) Biology James Pitts Jesse Walker Niche Axes in a Desert Environment: Abiotic and Biotic Influences on Scorpion Distribution, Abundance, and Activity Biology James MacMahon Kevin Williams The Velvet Ants (Hymenoptera: Mutillidae) of Trinidad: A Springboard for Biodiversity Studies in South America Biology James Pitts Gregory Wilson Amberly Evans Electron Energy Dependent Charging Effects of Multilayered Dielectric materials Physics JR Dennison Jonathan Wood Phycocyanobilin Content of Cyanobacteria Grown in the Produced Waters of the Uinta Basin, Utah Biology James Pitts Peter Zelina Retarded Potential Analyzer for a Microwave-Produced Plasma Physics Ajay Singh XI Zhang Functional Prediction of Intraday Cumulative Returns Mathematics and Statistics Piotr Kokoszka — 2012 Undergraduate Research Day on Capitol Hill — College of Science student researchers ascended Salt Lake City's Capitol Hill on January 25, 2012, to share their efforts and discoveries with Utah legislators and visitors. Stationed with their posters in the Capitol rotunda, Aggies honed their presentation skills and served as ambassadors for the college and the university. Students representing the College of Science were: Name of Student Title Department Mentor Landon Hillyard The Effect of Space Environment on Wireless Communications Devices’ Performance Physics JR Dennison and Jan Sojka Colby Russell Kearl Development of a Genetic Marker to Distinguish Between Pulex Irritans and Pulex Simulans, Two Potential Flea Vectors of Plague Transmission Biology Scott Bernhardt Brooke Siler Trapping a PRMT1: Target Complex by Tethering the Target to the Enzyme Chemistry and Biochemistry Joanie Hevel Kristina M. Sorensen Ultrasonic Analysis of Breast Tissue for Pathology Classification Mathematics and Statistics Timothy E. Doyle Jenica Sparrow Heng Ban The Effects of Acceleration on Nucleate Boiling and Bubble Departure Dynamics in Microgravity Physics JR Dennison Biology Donal Sinex Alysha Nicole Waters An Evaluation of an Neurophysiological Auditory Model 8 — — URCO Recipients Spring 2012 — — URCO (Undergraduate Research & Creative Opportunities) grants, given by the Office of Research and Graduate Studies, award up to $500 for students’ funded proposals. The students’ sponsoring academic department also matches the award. College of Science recipients: Name of Student Title Department Mentor Clayton Bingham Development of a Non-Destructive Morphological Estimator of Ploidy in Chlorella Biology Paul Wolf E. Parker Davenport Dark Adaptation and its Dependency on Light Intensity and Color Physics Shane L. Larson Eric Elton Photoinduced Reactivity of Substituted 3-Hydroxyflavonolate Zinc Complexes Chemistry and Biochemistry Lisa Berreau Emily Sue Frampton Cloning and Expression of the Air2 Protein Chemistry and Biochemistry Sean Johnson Landon Hillyard The Effect of the Space Environment on Bluetooth Protocol Communication Hardware Physics JR Dennison AJ Knight Dallas Nutt Linking Liquefied Sediment to a Paleoearthquake Along the East Cache Fault Geology Susanne Janecke Ben LaRiviere Paleoenvironmental Reconstruction of the Snake River Plain: Sedimentological Analysis of the Kimama Core, Hot Spot Drilling Program Geology Tammy Rittenour Taylor Rasmussen Locking Down the N-terminus of PRMT1 to Assess the Role of Motion in Activity Chemistry and Biochemistry Joanie Hevel Chelan Rogers Causes of Variation in Body Size in Two Species of Ladybird Beetle Biology Ted Evans Troy Siddoway Identifying Sources of Colorado River Bedload Through Time Upstream of Moab, Utah Geology Joel Pederson Brooke Siler Investigating the Importance of the N-terminal Negative Residues in Human PRMT1 Chemistry and Biochemistry Joanie Hevel Drake Smith Defining a Minimal PRMT5-like Activity in Yeast HSL7 Chemistry and Biochemistry Joanie Hevel Michael Strange Paleoecology and Paleogeography of the Middle Cambrian Spence Shale Member of the Langston Formation of Northern Utah and Southern Idaho Geology David Liddell — Keep in Touch on the Web — Everyone is encouraged to bookmark and visit the College of Science web site, www.usu.edu/science, frequently for news and information updates, as well as the college’s Facebook page, “USU College of Science.” 9 — Celebrating Undergraduate Research at the Student Showcase — April 3, 2012 — Name of Student Title of Project Department Mentor Clayton Bingham Non-Destructive Morphological Detection of DNA Content in Chlorella Biology Paul Wolf Brett Bostrom Zach Butterfield Ben Jackson Studying the Upper Atmosphere using a Sodium LIDAR Physics Titus Yuan Katelyn Breivik Background Sky Variability for Multi-Messenger Follow-up Surveys Physics Shane Larson Russell W. Butler The Role of the N-terminus of Human Protein Arginine Methyltrans- Chemistry and ferase 1 on Substrate Specificity Biochemistry Joanie Hevel Amy Crandall Initial Characterization of the NEXT Complex Chemistry and Biochemistry Sean Johnson MaLaura Creager Undergraduate Research Assistant Biology Kimberly Sullivan Christine Dhiman Survey of Erwin Amylovora, Casual Agent of Fire Blight, from Apple and Pear Orchards in Utah for Streptomycin Resistance Biology Claudia Nischwitz Chet Edlund Regulation of Cyanide Production in Pseudomonas Chlororaphis 06 Biology Anne J. Anderson Samantha Fairchild Removal of Instability from Reactive Metal Centers Chemistry and Biochemistry Siddhartha Das Aaron Fronk The Effects of Reclamation on Bird Populations in the Bear River Area Biology Kim Sullivan Makda Gebre Vero vs Vero 76 Cell Line for Viral Titers Biology/Chemistry Craig Day and Biochemistry Rylee Gregory Brynne Lytle Caenorhabditis Elegans: A Low-Cost in Vivo Animal Model for Efficacy Studies of Novel Antibiotics Chemistry and Biochemistry Tom Chang Daniel Heath Selective Degradation of Human Cancer Cells by Bluetongue Virus Infection and Regulation of Signaling Pathways within Infected Cells Biology Joseph K. K. Li John Hofer Thompson’s Jumping Ring Revisited Physics Ajay Singh Sean Hunt Computational Behavior of Stomatal Interactions Physics David Peak Colby Kearl Development of a Genetic Marker to Distinguish between Pulex irritans and Pulex Simulans, Two Potential Flea Vectors of Plague Transmission Biology Scott Bernhardt 10 — Undergraduate Research at the Student Showcase (cont.) — — Name of Student Title of Project Department Mentor Thomas Martin Comparison of Larger-Scale to Shorter-Scale Gravity Waves Over Antarctica Physics Mike J. Taylor Nicole Martineau Danny Morris Green Surfactants are Awesome! Biology Anne J. Anderson Glennie Mesa Patterning Carbon Nanotube Forest Physics T.C. Shen Lisa Montierth Robert Johnson Simulation Chamber for Space Environment Survivability Testing Physics JR Dennison James Dyer Kelby Peterson Micrometeoroid form MISSE Examined to Understand the Effects of the Space Environment on Space Suit Materials Physics JR Dennison Taylor Rasmussen Locking Down the N-terminus of PRMT 1 to Assess the Role of Motion in Activity Chemistry and Biochemistry Joanie Hevel Megi Rexhepaj The Pursuit of a Crystal Structure & Biochemical Characterization of RNA Surveillance Protein, M-Phase Phosphoprotein 6 (Mpp6) Chemistry and Biochemistry Sean Johnson Brooke Siler Trapping a PRMT 1: Target Complex by Tethering the Target to the Enzyme Chemistry and Biochemistry Joanie Hevel Charles Sim Alec Sim Electric Field Dependence of the Time to Electrostatic Breakdown in Insulating Polymers Physics JR Dennison Drake Smith Defining a Minimal PRMT 5-Like Activity in Yeast HSL7 Chemistry and Biochemistry Joanie Hevel Kristina M. Sorensen Ultrasonic Multivariate Analysis of Breast Tissue for Pathology Classification Mathematics and Timothy E. Doyle Statistics Jenica Sparro Landon Hillyard Heng Ban The Effects of Acceleration on Nucleate Boiling and Bubble Departure Dynamics in Microgravity Physics Michael Strange Paleoecology and Paleogeography of the Middle Cambrian Spence Shale Member of the Langston Formation of Northern Utah and Geology Southern Idaho W. David Liddell Brian Tracy Lunar Tidal Effects on the Equatorial Vertical Plasma Drifts over Jicamarca, Peru Physics Bela Fejer Rachel Ward Comparison of Gravity Wave Behavior in Northern and Southern Hemispheric Summer Seasons Through Observation of Polar Mesospheric Clouds Physics Mike Taylor 11 JR Dennison — Utah State Students Present Research at NCUR 2012 — Name of Student Title of Project Department Mentor Thomas Anderson Development and Testing of Novel Pradimicin-type Antifungal and Antiviral Whitney Morgan Agents Biology Jon Takemoto Physics JR Dennison Doug Ball An Electron-Photon Duel: Cathodoluminescence in Disordered Polymeric Materials Russell Butler Chemistry The Role of the N-Terminus of Human Protein Arginine Methyltranferase 1 on and Joanie Hevel Substrate Specificity Biochemistry Tyler Crossley Daniel Heath Viratherapy for Human Cancer Cells: Identification of Oncolytic Pathways Potentially Used by Bluetongue Viruses to Kill Human Cancers Cell and Molecular Biology Joseph K.-K. Li Christine Dhiman Survey of Erwinia Amylovora, Casual Agent of Fire Blight, From Apple and Pear Orchards in Utah for Streptomycin Resistance Biology Claudia Nischwitz Eric Elton Synthesis, Characterization, and H2O Reactivity of N2S2-Coordinated Pb(II) Compounds Chemistry and Lisa Berreau Biochemistry Amberly Evans Low Temperature Cathodoluminescence in Disordered SiO2 Physics Jonathan Gish Production of the Industrial Feedstock Chemical HMF From Algae Chemistry and Alvan C. Hengge Biochemistry Camden Hunt Specialized Facial Hairs on Female Bees: Evidence for Multiple Evolutionary Events to Assist Bees in Harvesting Pollen from Nototribic Flowers Biology Terry Griswold Colby Kearl Development of a Genetic Marker to Distinguish Between Pulex Irritans and Pulex Simulans, Two Potential Flea Vectors of Plague Transmission Biology Scott Bernhardt Lisa Montierth Robert Johnson Simulation Chamber for Space Environment Survivability Testing Physics JR Dennison Malea Moody Atmospheric Distribution of Cosmic Rays and the Connection to Solar Activity Physics Shane Larson Benjamin Morris Environmental, Ecological, and Human Correlates of Species Diversity in Highly Virulent Human Infectious Diseases Ethan P. White 12 Biology JR Dennison — Utah State Students Present Research at NCUR 2012 (cont.) — Name of Student Title of Project Department Mentor Kelby Peterson Micrometeoroid From Misse Examined to Understand the Effects of the Space Physics Environment on Space Suit Materials Megi Rexhepaj Biochemical Characterization and the Pursuit of Crystal Structures Chemistry and Biochemistry Sean Johnson Varden Semerjyan Reconfiguration of the Receiver System for Sodium Doppler Wind/ Temperature Lidar Physics Titus Yuan Brooke Siler Trapping a PRMT1: Target Complex by Tethering the Target to the Enzyme Chemistry and Biochemistry Joanie Hevel Charles Sim Electric Field Dependence of the Time to Electrostatic Breakdown in Insulating Polymers Physics JR Dennison Drake Smith Defining a Minimal PRMT5-Like Activity in Yeast HSL7 Chemistry and Biochemistry Joanie Hevel Jenica Sparrow Landon Hillyard The Effect of Acceleration on Nucleate Boiling and Bubble Departure Dynamics in Microgravity Physics JR Dennison Heather Tarbet Understanding Molecular Recognition of PRMTs Using Truncation Mutants Chemistry and Biochemistry Joanie Hevel JR Dennison — College of Science Dean’s Office Welcomes New Deans’ and Development Asst. — The College of Science Dean's Office is excited to welcome Vicki Jones to our team as our new Dean's/Development Assistant. Vicki hails from Fallon, Nevada, where she previously worked for University of Nevada Cooperative Extension. A vivacious self-starter, she’s blessed with a diverse background of experience ranging from selfemployment to community activism and leadership. Education is very important to Vicki and she continues to pursue her college education, having earned an associate’s degree at Western Nevada College in 2011, while working full-time and raising her family. “I’m very excited to be here,” Vicki says. “Moving to Logan is a huge change for my family and I, but I’ve already fallen in love with USU and beautiful Cache Valley. The newest item for my bucket list is to make it up Old Main Hill without losing my breath.” 13 Nicole Boehme** and James Pitts. “Niche Partitioning of Velvet Ant (Hymenoptera: Mutillidae) Communities in Sand Dune Habitats at Ash Meadows National Wildlife Refuge, Nye County, Nevada.” — STUDENT ACTIVITIES — Student Awards, Recognition & Grants undergraduate* graduate** BIOLOGY CASS The following presentations were made at the Entomological Society of America Pacific Branch Meeting, Portland, Oregon, 2528 March 2012. Jennifer Meehan** (presenter), David Hansen**, W. Kent Tobiska, Jared Fulgham, Robert W. Schunk, Jan J. Sojka, Herbert C. Carlson, Don Rice, Larry C. Gardner, Ludger Scherliess, Lie Zhu, C. Tschan, D. Bouwer, and R. Shelley presented a poster titled “New Space Weather Data Sources and Products for Communication and Navigation Systems” at the American Meteorological Society Annual Meeting, New Orleans, Louisiana, 22-26 January 2012. Sarah Clark** and James Pitts. “Effect of Dispersed Oil and Gas Development on a Bee Community in the Piceance Basin, Colorado.” 1st place in the Masters student oral competition. Emily Sadler** and James Pitts. “The Black-headed Conundrum: Species Boundaries in Chyphotes (Hymenoptera: Chyphotidae).” 2nd place in the PhD student poster competition. Chemistry & Biochemistry The following posters were presented at the Annual Meeting of the American Society for Biochemistry and Molecular Biology, San Diego, CA, 21-25 April 2012: Jonathan Koch** and James Strange: “Applying Molecular Tools to Investigate the Species Boundaries of North American Thoracobombus (Hymenoptera: Apidae, Bombus).” 1st place in the PhD student oral competition. Yuan Chu**, Nicholas H. Williams, and Alvan C. Hengge. “A Simple Arg to Lys Mutant of Protein Phosphatase 1 Exhibits Catalytic Efficiencies Toward Monoanionic Substrates Superior to Wild Type.” Physics Amberly Evans ** and JR Dennsion “Space Plasma Environment Induced Luminescence of Materials on Space Based Observatories” NASA Space Technology Research Fellowship (NSTRF) September 2012-August 2013 $170,000 Viacheslav I. Kuznetsov**, Sean J. Johnson, and Alvan C. Hengge. “High Resolution Structure of the Phosphatase VHZ Explains Unexpected Substrate Specificity, and Suggests the Presence of Metavanadate at the Active Site.” Mark P. Haney** and Alvan C. Hengge. “The Phosphoramidase Competency of Prototypical Phosphatase Motifs.” Rachel Ward* American Institute of Physics, Society of Physics Students Outstanding student for undergraduate research award. “Comparison of Northern and Southern Hemispheric Gravity Waves through Analysis of Polar Mesospheric Clouds Imaged by the AIM Satellite.” International Conference of Physics Students (ICPS), Utrecht, Netherlands, 4-10 August 2012. Caleb J. Allpress**, Atta M. Arif, Dylan T. Houghton, and Lisa M. Berreau presented a poster titled “Photochemically Initiated Oxidative Carbon-carbon Bond Cleavage Reactivity in Chlorodiketonate Ni(II) Complexes,” at the Bioinorganic Chemistry Gordon Research Seminar, Ventura, CA, 26-29 Jan. 2012. Student Presentations undergraduate* graduate** Geology Biology The following posters were presented at the AGU Fall Meeting, San Francisco, CA, 5-9 December 2011: The following oral presentations were made at the Annual Meeting of the Intermountain Branch, American Society for Microbiology at Idaho State University, Pocatello, ID, 7 April 2012: Lisa Seunarine and Anthony R. Lowry. “Constraining the Dynamical Behavior of the Western U.S. Lithosphere Through Computational Modeling: Evidence That Lower Crustal Flow Plays a Significant Role in Load Accommodation.” Kawasaki, Yukie**, Michelle Grilley, and Jon Y. Takemoto. “Syringomycin E: A Potential Organic-compatible Agrifungicide.” Eric P. Beard, J.R. Hoggan and Anthony R. Lowry “Applying Modern Measurements of Pleistocene Loads to Model Lithospheric Rheology.” Shrestha, Sanjib**, Michelle Grilley, and Jon Y. Takemoto. “Bioactive Properties and Mechanism of Action of Novel Antifungal Aminoglycoside Analogs.” 14 Student Awards Student Presentations Joseph Li served as an invited conference judge for undergraduate and graduate research posters at the 10th Annual MGE@MSA/ WAESO Student Research Conference at the Memorial Union, Arizona State University, Tempe, AZ, 14 February 2012. Physics The following posters were presented at the 12th Spacecraft Charging Technology Conference, Kitakyushu, Japan, 14-18 May 2012: Physics Amberly Evans**, Gregory Wilson**, Justin Dekany**, Alec M. Sim, and JR Dennison. “Low Temperature Cathodoluminescence of Space Observatory Materials.” Jan J. Sojka, on behalf of the Utah State University Department of Physics, accepted a 2012-2015 Department of Distinction Award for Improving Undergraduate Physics Education from the American Physical Society Committee on Education, Atlanta, GA, 2 April 2012. Gregory Wilson**, Amberly Evans**, Justin Dekany**, and JR Dennsion. “Charging Effects of Multilayered Dielectric Spacecraft Materials Surface Voltage, Discharge and Arcing.” Faculty Grants Justin Dekany**, Robert H. Johnson*, Gregory Wilson**, Amberly Evans**, and JR Dennison. “Ultrahigh Vacuum Cryostat System for Extended Low Temperature Space Environment Testing.” Biology Grants Claudia Nischwitz “Identification of Alternate Inoculum Sources for Erwinia amylovora in Apple and Pear Orchards in Utah” USDA Specialty Crop Block Grant 15 April 2012 - 30 March 2013 $9,595 Justin Dekany**, Alec M. Sim**, Jerilyn Brunson**, and JR Dennison. “Electron Transport Models and Precision Measurements in a Constant Voltage Chamber.” Robert H. Johnson*, Lisa D. Montierth*, JR Dennison, James S. Dyer, Ethan Lindstrom and Alex Chanson*. “Small Scale Simulation Chamber for Space Environment Survivability Testing.” Claudia Nischwitz “Identification of Powdery Mildew Species and Inoculums Sources for Improved Timing and Reduction of Fungicide Applications in Utah Fruit Tree Orchards” USDA Specialty Crop Block Grant 1 May 2012 - 30 April 2013 $9,758 Alec M. Sim** and JR Dennison. “Unified Density of States Based Model of Electron Transport and Emission of Spacecraft Materials.” Claudia Nischwitz and Diane Alston “Identification of Onion Pathogens, Alternate Hosts and Vectors in Utah” USDA Specialty Crop Block Grant 15 April 2012 - 30 March 2013 $10,553 Charles Sim*, Alec M. Sim**, Matthew Stromo*, and JR Dennsion. “Defect-Driven Dynamic Model of Electrostatic Discharge and Endurance Time Measurements of Polymeric Spacecraft Materials.” Joshua L. Hodges**, Alec M. Sim**, Justin Dekany**. Gregory Wilson**, Amberly Evans**, and JR Dennison. “In Situ Surface Voltage Measurements of Layered Dielectrics.” — Diane Alston “A New Cherry Insect Pest, the Spotted Wing Drosophila” USDA Specialty Crop Block Grant 1 January 2012 - 31 December 2013 $10,755 FACULTY ACTIVITIES — Math Nathan Geer National Science Foundation "Moab Topology Conference 2012” 1 April 2012 - 31 March 2013 $25,000 Awards & Recognition Biology Physics Timothy Gilbertson was recognized as University Graduate Mentor for 2012 at Utah State University, Logan, UT, 6 May 2012. Keith A. Mott and David Peak “Integrated Stomatal Response to Environmental Input” National Science Foundation 1 September 2011 - 31 August 2014 $524,502 Theresa Pitts-Singer was awarded the Pacific Branch Entomological Society of America Physiology, Biochemistry, and Toxicology Award at the Entomological Society of America Pacific Branch Meeting, Portland, OR, 25-28 March 2012. Student Presentations 15 Student Presentations Lisa M. Berreau presented an talk titled, “Photoinduced COrelease Chemistry of Divalent Metal Flavonolate Complexes,” at the 243rd American Chemical Society National Meeting, San Diego, CA, 25 March 2012. Shane L. Larson “Wide-field Variability Search Strategies for Multi-messenger Astronomy” NASA EPSCoR Minigrant 1 July 2011 - 30 June 2012 $23,633 Lisa M. Berreau gave the keynote lecture titled, “Taking the Field: Learning to Play the Pop Flies and Bad Hops through Undergraduate Research” at the 2nd Annual Student Research Day at Dixie State College, St. George, UT, 8 April 2012. Ian Anderson and Charles Torre “Interdisciplinary Software Infrastructure for Differential Geometry, Lie Theory and their Applications” National Science Foundation 1 April 2012 - 31 March 2015 $360,845 Lisa M. Berreau chaired the NIH F04A Special Emphasis Fellowship Panel, 19-20 March 2012. Geology Lee Pearson, JR Dennison, and Tim Doyle “Volume Charge Distribution Measurement in Thin Dielectrics” Small Business Tech. Transfer Research, Air Force Research Lab March 2012 - November 2013 $100,000 The following presentations were made at the Rocky Mountain Section of the Geological Society of America, 11-12 May 2012: Carol M. Dehler, Mark Pecha and Timothy Lawton. “Detrital Zircons Studies in the Western Interior U.S. and Their Implications for Ancient Landscape evolution.” Dr. Dehler chaired this session. JR Dennison “Advanced Modeling and Measurements of Spacecraft Materials Properties for Spacecraft Charging” National Academies Research Fellowship, Air Force Research Lab January 2012 - December 2012 $122,000 Carol M. Dehler, Karl E. Karlstrom, George, E. Gehrels, J. Michael Timmons and Laura J. Crossey. “Stratigraphic Revision, Provenance, and New Age Constraints of the Nankoweap Formation and Chuar Group, Grand Canyon Supergroup, Grand Canyon Arizona.” JR Dennison and Ryan Hoffmann “James Webb Space Telescope Electron-Fused Silica RIC TestsPhase VI of Materials Testing of Highly Insulating Materials for the James Webb Space Telescope” NASA James Webb Space Telescope Project by Goddard Space Flight Center May 2012 - November 2012 $69,410 Carol M. Dehler and Robert C. Mahon presented an abstract titled “Detrital Zircon Provenance, Age Constraints and Revised Stratigraphy of the Mesoproterozoic and Neoproterozoic Pahrump Group (Supergroup?), Death Valley Region, California.” Anthony R. Lowry presented an invited talk titled “Why Mountains Are Where They Are: Quartz Marks the Spot” at the Department of Earth and Planetary Sciences Seminar Series, Northwestern University, Evanston, IL, 13 January 2012. Faculty Presentations & Professional Activities undergraduate* graduate** Anthony R. Lowry, D.L. Schutt, K.D. Putrika, Marlon M. Jean and M. Perez-Gussinye presented a talk titled “Hypothesis-Testing Proposed Control of Strain Weakening by Crustal Quartz Abundance” at the AGU Fall Meeting, San Francisco, CA, 5-9 December 2011. Biology The following oral presentations were made at the Entomological Society of America Pacific Branch Meeting, Portland, Oregon, 2528 March 2012: Terry Griswold “Mining Collections for Viable Candidate Pollinators of Crops.” Mathematics and Statistics S.C. Isom, John R. Stevens, R. Li, W. Spollen and R.S. Prather presented a poster titled “Transcriptional Profiling By HighThroughput Sequencing of Porcine Pre- and Peri-Implantation Embryos” at the Annual Conference of the International Embryo Transfer Society, Phoenix, AZ, 7-10 January 2012. Theresa Pitts-Singer “Fine-tuning Blue Orchard Bee Management for Almond Pollination.” Chemistry John R. Stevens presented a talk "Gene Set Testing to Characterize Multivariately Differentially Expressed Genes" at the Kansas State University Conference on Applied Statistics in Agriculture, Manhattan KS, 29 April - 1 May 2012. Lisa M. Berreau presented poster titled, “Aliphatic Carbon-carbon Bond Cleavage Reactivity in Photoinitiated Systems,” at the Metals in Biology Gordon Research Conference, Ventura, CA, 22-27 Jan. 2012. 16 Student Presentations Faculty Grants Adele Cutler presented “Random Forests and Archetypeal Analysis of Biomedical Data" at the Salford Analytics and Data Mining Conference, San Diego, CA, 24-25 May 2012. Katarzyna Grubel**, Amy R. Marts, Samuel M. Greer, David L. Tierney, Caleb J. Allpress**, Stacey N. Anderson**, Brynna J. Laughlin, Rhett C. Smith, Atta M. Arif, and Lisa M. Berreau. 2012. Photoinitiated Dioxygenase-type Reactivity of Open-shell 3d Divalent Metal Flavonolate Complexes. Eur. J. Inorg. Chem. DOI: 10.1002: ejic.201200212. Juergen Symanzik presented an invited talk titled “The Anscombe Data Sets: Explained and Expanded” at the Interface 2012 Conference (43rd Symposium on the Interface: Computing Science and Statistics), Houston, TX, 18 May 2012. Jared K. Olson and Alexander I. Boldyrev. 2012. Electronic Transmutation: Boron Acquiring an Extra Electron Becomes “Carbon.” Chemical Physics Letters 523: 83-86. Juergen Symanzik (joint with Nathan Voge) presented an invited talk titled “Ignoring the Spatial Context in Intro Stats Classes - and some Simple Graphical Remedies” at the 2011 Joint Statistical Meetings (ASA), Miami Beach, FL, 3 August 2011. Wei-Li Li, Constantin Romanescu, Timur R. Galeev**, Zachary Piazza, Alexander I. Boldyrev, and Lai-Sheng Wang. 2012. Transition-Metal-Centered Nine-Membered Boron Rings: M©B9 and M©B9-. (M = Rh, Ir). Journal of the American Chemical Society 134: 165-168. Juergen Symanzik presented an invited talk titled “3-D Stereoscopic Plots: From History to R” at the Interface 2011 Conference (42nd Symposium on the Interface: Computing Science and Statistics), Cary, NC, 2 June 2011. N. G. C. Astrath, L. C. Malacarne, G. V. B. Lukasievicz, H. S. Bernabe, J. H. Rohling, M. L. Baesso, J. Shen and S. E. Bialkowski. 2012. A 3-Dimensional Time-Resolved Photothermal Deflection “Mirage” Method. Applied Physics Letters 100: 091908. Physics Shane L. Larson presented an invited talk entitled “Small Aperture Wide Field Surveys for Gravitational Wave Counterparts” at the American Physical Society Meeting, Atlanta, GA, 2 April 2012. The above paper was also selected for the April 2012 issue of Virtual Journal of Ultrafast Science. The Virtual Journal, which is published by the American Physical Society and the American Institute of Physics in cooperation with numerous other societies and publishers, is an edited compilation of links to articles from participating publishers, covering a focused area of frontier research. Faculty Publications undergraduate* graduate** Biology Geology Charles W. Fox, William G. Wallin, Martha L. Bush, Mary Ellen Czesak, and Frank J. Messina. 2012. Effects of Seed Beetles on the Performance of Desert Legumes Depend on Host Species, Plant Stage, and Beetle Density. Journal of Arid Environments 80: 10-16. J. Paul, C.P. Rajendran, Anthony R. Lowry, V, Andrade, and K. Rajendran. 2012. Andaman Postseismic Deformation Observations: Still Slipping After All These Years? Bulleting Seismological Society of America 102: 343-351. Paul G. Wolf. 2012. Plastid Genome Diversity. In "Plant Genome Diversity" Edited by Johann Greilhuber, Jonathan Wendel, Ilia J. Leitch, Jaroslav Dolezel, Springer Verlag, pp. 145-154. H.T. Berglund, A.F. Sheehan, M.H. Murray, M. Roy, Anthony R. Lowry, R.S. Nerem, and F. Blume. 2012. Distributed Deformation Across the Rio Grande Rift, Great Plains and Colorado Plateau. Geology 40: 23-26. Joseph K.-K. Li. 2012. Bluetongue viruses: Propagation, Quantification and Storage. Current Protocols in Microbiology Unit 15C.4. 1 - 18 (CP-11-0063). Mathematics and Statistics Mark W. Ellis. 2012. The Problem with the Species Problem. Hist. Phil. Life Sci 33: 343-364. J.R. Stevens, A. Cutler, and D.R. Cutler. 2012. Random Forests. In “Ensemble Machine Learning: Methods and Applications” Edited by Cha Zhang (Microsoft) and Yunqian Ma (Honeywell), Springer, pp.157-175. Chemistry & Biochemistry Alexander S. Ivanov**, Konstantin V. Bozhenko, and Alexander I. Boldyrev. 2012. Peculiar Transformations in the CxHxP4-x (x = 04) Series. Journal of Chemical Theory and Computations 8: 1351408. Juergen Symanzik, R. E. Moustafa, and A. S. Hadi. 2011. MultiClass Data Exploration Using Space Transformed Visualization Plots. Journal of Computational and Graphical Statistics 20: 298-315 Russell A. Allred**, Deborah C. Bebout, Atta M. Arif, and Lisa M. Berreau. 2012. Mercury Coordination Chemistry of a Nitrogen/ Thioether Sulfur Ligand having an Internal Hydrogen Bond Donor: Generation of a Thioether-coordinated Dimercurous Complex. Main Group Chemistry 11: 53-67. Faculty Grants Juergen Symanzik. 2011. Three-Dimensional Stereoscopic Plots, Wiley Interdisciplinary Reviews (WIREs). Computational Statistics 3: 483-496 17 Faculty Presentations J. Ding, and Juergen Symanzik, A. Sharif, J. Wang, S. Duntley, Shannon, W. D. 2011. Powerful Actigraphy Data Through Functional Representation. Chance 24: 30-36 David E. Brown and L. Langley. 2012. Forbidden Subgraph Characterization of Bipartite Unit Probe Interval Graphs. Australasian J. Combinatorics 52: 19-31. Physics Ian Anderson and Charles Torre. 2012. New Symbolic Tools for Differential Geometry, Gravitation and Field Theory. Journal of Mathematical Physics DOI: 10.1063/1.3676296. Charles Torre. 2012. All Homogeneous Pure Radiation Space Times Satisfy the Einstein Maxwell Equations. Classical and Quantum Gravity 29:077001. JR Dennison, Amberly Evans*, Danielle Fullmer*, and Joshua L Hodges**. 2012. Charge Enhanced Contamination and Environmental Degradation of MISSE-6 SUSpECS Materials. IEEE Trans. On Plasma Sci 40: 254-261. Amberly Evans*, and JR Dennison. 2012. The Effects of Surface Modification on Spacecraft Charging Parameters. IEEE Trans. On Plasma Sci 40: 291-297. Gregory Wilson** and JR Dennison. 2012. Approximation of Range in Materials as a Function of Incident Electron Energy. IEEE Trans. On Plasma Sci 40: 305-310. RC Hoffmann and JR Dennison. 2012. Methods to Determine Total Electron-Induced Electron Yields Over Broad Range of Conductive and Nonconductive Materials. IEEE Trans. On Plasma Sci 40: 298304. Faculty Presentations 18 Faculty Presentations 19 20 ADDRESS SERVICES REQUESTED Office of the Dean 0305 Old Main Hill Logan, UT 84322-0305 Science Scene is an internal newsletter sent to the Utah State Board of Trustees, Utah State Administration, and the College of Science faculty and staff. It is published regularly throughout the school year. Its purpose is to inform the Board of Trustees and the College of the research activities of our faculty and students, also providing a forum for peers to follow one another’s careers and professional development. Editor & Layout –Vicki Jones (797-2488). A special thanks to Dean James A. MacMahon and Associate Dean Lisa M. Berreau for editorial support, and to our departmental newsletter representatives — Nancy Kay Harrison, Biology; Geri Child, Chemistry and Biochemistry; Vicki Anderson , Computer Science; Marsha Hunt, Geology; Meredith Purintun, Mathematics & Statistics; Sharon Pappas, Physics; and Melanie Oldroyd, The Center for Atmospheric & Space Sciences (CASS).